Moon, H., Zheng, X., Loh, T., Jang, H., Liu, Y., Jung, D., Williams, D. and Shen, H. (2017). Effects of PTCs on nonsense‑mediated mRNA decay are dependent on PTC location. Oncology Letters.
http://dx.doi.org/10.3892/ol.2017.5627

Loh, T., Choi, N., Moon, H., Jang, H., Liu, Y., Zhou, J., Zheng, X. and Shen, H. (2017). Suppression of 5′ splice-sites through multiple exonic motifs by hnRNP L. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1860(3), pp.363-373.
http://dx.doi.org/10.1016/j.bbagrm.2017.01.010

Loh, T., Moon, H., Jang, H., Liu, Y., Choi, N., Shen, S., Williams, D., Jung, D., Zheng, X. and Shen, H. (2016). SR proteins regulate V6exon splicing of CD44 pre-mRNA. BMB Reports, 49(11), pp.612-616.
http://dx.doi.org/10.5483/bmbrep.2016.49.11.118

Zheng, X., Cho, S., Moon, H., Loh, T., Jang, H. and Shen, H. (2016). Detecting RNA–Protein Interaction Using End-Labeled Biotinylated RNA Oligonucleotides and Immunoblotting. Methods in Molecular Biology, pp.35-44.
http://dx.doi.org/10.1007/978-1-4939-3591-8_4

Moon, H., Zheng, X., Loh, T., Jang, H., Liu, Y., Jung, D., Williams, D. and Shen, H. (2015). Identification of Regulatory-RNAs for Alternative Splicing of Ron Proto-Oncogene. Journal of Cancer, 6(12), pp.1346-1351.
http://dx.doi.org/10.7150/jca.13361

Cho, S., Moon, H., Loh, T., Jang, H., Liu, Y., Zhou, J., Ohn, T., Zheng, X. and Shen, H. (2015). Splicing inhibition of U2AF 65 leads to alternative exon skipping. Proceedings of the National Academy of Sciences, 112(32), pp.9926-9931.
http://dx.doi.org/10.1073/pnas.1500639112

Loh, T., Moon, H., Cho, S., Jang, H., Liu, Y., Tai, H., Jung, D., Williams, D., Kim, H., Shin, M., Liao, D., Zhou, J., Shi, W., Zheng, X. and Shen, H. (2015). CD44 alternative splicing and hnRNP A1 expression are associated with the metastasis of breast cancer. Oncology Reports.
http://dx.doi.org/10.3892/or.2015.4110

Loh, T., Cho, S., Moon, H., Jang, H., Williams, D., Jung, D., Kim, I., Ghigna, C., Biamonti, G., Zheng, X. and Shen, H. (2015). hnRNP L inhibits CD44 V10 exon splicing through interacting with its upstream intron. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1849(6), pp.743-750.
http://dx.doi.org/10.1016/j.bbagrm.2015.01.004

Moon, H., Cho, S., Loh, T., Oh, H., Jang, H., Zhou, J., Kwon, Y., Liao, D., Jun, Y., Eom, S., Ghigna, C., Biamonti, G., Green, M., Zheng, X. and Shen, H. (2014). SRSF2 promotes splicing and transcription of exon 11 included isoform in Ron proto-oncogene. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1839(11), pp.1132-1140.
http://dx.doi.org/10.1016/j.bbagrm.2014.09.003

Cho, S., Moon, H., Loh, T., Oh, H., Williams, D., Liao, D., Zhou, J., Green, M., Zheng, X. and Shen, H. (2014). PSF contacts exon 7 of SMN2 pre-mRNA to promote exon 7 inclusion. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1839(6), pp.517-525.
http://dx.doi.org/10.1016/j.bbagrm.2014.03.003

Zheng, X., Cho, S., Moon, H., Loh, T., Oh, H., Green, M. and Shen, H. (2014). Polypyrimidine tract binding protein inhibits IgM pre-mRNA splicing by diverting U2 snRNA base-pairing away from the branch point. RNA, 20(4), pp.440-446.
http://dx.doi.org/10.1261/rna.043737.113

Cho, S., Moon, H., Loh, T., Oh, H., Cho, S., Choy, H., Song, W., Chun, J., Zheng, X. and Shen, H. (2014). hnRNP M facilitates exon 7 inclusion of SMN2 pre-mRNA in spinal muscular atrophy by targeting an enhancer on exon 7. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1839(4), pp.306-315.
http://dx.doi.org/10.1016/j.bbagrm.2014.02.006

Jang, H., Lee, M., Loh, T., Choi, S., Oh, H., Moon, H., Cho, S., Hong, S., Kim, D., Sheng, Z., Green, M., Park, D., Zheng, X. and Shen, H. (2014). Exon 9 skipping of apoptotic caspase-2 pre-mRNA is promoted by SRSF3 through interaction with exon 8. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1839(1), pp.25-32.
http://dx.doi.org/10.1016/j.bbagrm.2013.11.006

Cho, S., Moon, H., Loh, T., Oh, H., Kim, H., Shin, M., Liao, D., Zhou, J., Zheng, X. and Shen, H. (2014). 3′ Splice Site Sequences of Spinal Muscular Atrophy Related SMN2 Pre-mRNA Include Enhancers for Nearby Exons. The Scientific World Journal, 2014, pp.1-9.
http://dx.doi.org/10.1155/2014/617842

Yang, X., Shen, H., Gao, X., Zheng, X., Qin, R. and Zhou, J. (2013). Predominant expression of exon 7 skipped SMN mRNAs in lung based on analysis of transcriptome sequencing datasets. Neurological Sciences, 35(3), pp.391-396.
http://dx.doi.org/10.1007/s10072-013-1524-4

Loh, T., Moon, H., Cho, S., Jung, D., Hong, S., Kim, D., Green, M., Zheng, X., Zhou, J. and Shen, H. (2013). SC35 promotes splicing of the C5-V6-C6 isoform of CD44 pre-mRNA. Oncology Reports.
http://dx.doi.org/10.3892/or.2013.2812

E., Z., Wang, L., Qin, R., Shen, H. and Zhou, J. (2014). Genome-Wide Characterisation of Gene Expression in Rice Leaf Blades at 25°C and 30°C. The Scientific World Journal, 2014, pp.1-7.
http://dx.doi.org/10.1155/2014/917292

Moon, H., Cho, S., Loh, T., Zhou, J., Ghigna, C., Biamonti, G., Green, M., Zheng, X. and Shen, H. (2013). A 2-nt RNA enhancer on exon 11 promotes exon 11 inclusion of the Ron proto-oncogene. Oncology Reports.
http://dx.doi.org/10.3892/or.2013.2835

Oh, H., Lee, E., Jang, H., Lee, J., Moon, H., Sheng, Z., Jun, Y., Loh, T., Cho, S., Zhou, J., Green, M., Zheng, X. and Shen, H. (2013). hnRNP A1 contacts exon 5 to promote exon 6 inclusion of apoptotic Fas gene. Apoptosis, 18(7), pp.825-835.
http://dx.doi.org/10.1007/s10495-013-0824-8

Moon, H., Cho, S., Yang, X., Zhou, J., Loh, T., Zheng, X. and Shen, H. (2012). Identification of novel splicing variants from RON proto-oncogene pre-mRNA. Oncology Reports.
http://dx.doi.org/10.1007/s10495-013-0824-8

Cho, S., Moon, H., Yang, X., Zhou, J., Kim, H., Shin, M., Loh, T., Zheng, X. and Shen, H. (2012). Validation of trans-acting elements that promote exon 7 skipping of SMN2 in SMN2-GFP stable cell line. Biochemical and Biophysical Research Communications, 423(3), pp.531-535.
http://dx.doi.org/10.1016/j.bbrc.2012.05.161

Zhou, J., Liao, J., Zheng, X. and Shen, H. (2012). Chimeric RNAs as potential biomarkers for tumor diagnosis. BMB reports, 45(3), pp.133-140.
http://dx.doi.org/10.5483/BMBRep.2012.45.3.133.

Lee, J., Zhou, J., Zheng, X., Cho, S., Moon, H., Loh, T., Jo, K. and Shen, H. (2012). Identification of a novel cis-element that regulates alternative splicing of Bcl-x pre-mRNA. Biochemical and Biophysical Research Communications, 420(2), pp.467-472.
http://dx.doi.org/10.1016/j.bbrc.2012.03.029.

Zhou, J., Zheng, X. and Shen, H. (2012). Targeting RNA-splicing for SMA treatment. Mol Cells, 33(3), pp.223-228.
http://dx.doi.org/10.1007/s10059-012-0005-6.

Shen, H., Zheng, X., Luecke, S. and Green, M. (2010). The U2AF35-related protein Urp contacts the 3' splice site to promote U12-type intron splicing and the second step of U2-type intron splicing. Genes & Development, 24(21), pp.2389-2394.
http://dx.doi.org/10.1101/gad.1974810.

Shen, H. (2009). UAP56- a key player with surprisingly diverse roles in pre-mRNA splicing and nuclear export. BMB Reports, 42(4), pp.185-188.
http://www.bmbreports.org/journal/view.html?volume=42&number=4&spage=185

Jenkins, J., Shen, H., Green, M. and Kielkopf, C. (2008). Solution Conformation and Thermodynamic Characteristics of RNA Binding by the Splicing Factor U2AF65. Journal of Biological Chemistry, 283(48), pp.33641-33649.
http://dx.doi.org/10.1074/jbc.M806297200.

Shen, H., Zheng, X., Shen, J., Zhang, L., Zhao, R. and Green, M. (2008). Distinct activities of the DExD/H-box splicing factor hUAP56 facilitate stepwise assembly of the spliceosome. Genes & Development, 22(13), pp.1796-1803.
http://dx.doi.org/10.1101/gad.1657308.

Garifulin, O., Qi, Z., Shen, H., Patnala, S., Green, M. and Boyartchuk, V. (2007). Irf3 Polymorphism Alters Induction of Interferon Beta in Response to Listeria monocytogenes Infection. PLoS Genetics, 3(9), p.e152.
http://dx.doi.org/10.1371/journal.pgen.0030152

Shen, H. and Green, M. (2007). RS domain–splicing signal interactions in splicing of U12-type and U2-type introns. Nat Struct Mol Biol, 14(7), pp.597-603.
http://dx.doi.org/10.1038/nsmb1263

Shen, H. (2006). RS domains contact splicing signalsand promote splicing by a common mechanism in yeast through humans. Genes & Development, 20(13), pp.1755-1765.
http://dx.doi.org/10.1101/gad.1422106

Sickmier, E., Frato, K., Shen, H., Paranawithana, S., Green, M. and Kielkopf, C. (2006). Structural Basis for Polypyrimidine Tract Recognition by the Essential Pre-mRNA Splicing Factor U2AF65. Molecular Cell, 23(1), pp.49-59.
http://dx.doi.org/10.1016/j.molcel.2006.05.025

Ghigna, C., Giordano, S., Shen, H., Benvenuto, F., Castiglioni, F., Comoglio, P., Green, M., Riva, S. and Biamonti, G. (2005). Cell Motility Is Controlled by SF2/ASF through Alternative Splicing of the Ron Protooncogene. Molecular Cell, 20(6), pp.881-890.
http://dx.doi.org/10.1016/j.molcel.2005.10.026

Shen, H. and Green, M. (2004). A Pathway of Sequential Arginine-Serine-Rich Domain-Splicing Signal Interactions during Mammalian Spliceosome Assembly. Molecular Cell, 16(3), pp.363-373.
http://dx.doi.org/10.1016/j.molcel.2004.10.021

Shen, H., Kan, J. and Green, M. (2004). Arginine-Serine-Rich Domains Bound at Splicing Enhancers Contact the Branchpoint to Promote Prespliceosome Assembly. Molecular Cell, 13(3), pp.367-376.
http://dx.doi.org/10.1016/S1097-2765(04)00025-5

Shen, H., Kan, J., Ghigna, C., Biamonti, G. and Green, M. (2004). A single polypyrimidine tract binding protein (PTB) binding site mediates splicing inhibition at mouse IgM exons M1 and M2. RNA, 10(5), pp.787-794.
http://dx.doi.org/10.1261/rna.5229704

Sohn, Y., Shen, H. and Kang, C. (2003). Stepwise Walking and Cross-Linking of RNA with Elongating T7 RNA Polymerase. Methods in Enzymology, 371, pp.170-179.
http://dx.doi.org/10.1016/S0076-6879(03)71012-X

Shen, H. and Kang, C. (2000). Two Site Contact of Elongating Transcripts to Phage T7 RNA Polymerase at C-terminal Regions. Journal of Biological Chemistry, 276(6), pp.4080-4084.
http://dx.doi.org/10.1074/jbc.M008616200